S3 generic that delegates to Giotto::addStatistics() for plain giotto
objects, and adds DuckDB-native polygon area support for GiottoDB objects
with dbSpatial-backed polygons.
Usage
addStatistics(gobject, ...)
# S3 method for class 'giotto'
addStatistics(
gobject,
feat_type = NULL,
spat_unit = NULL,
stats = c("feature", "cell", "area"),
expression_values = c("normalized", "scaled", "custom"),
detection_threshold = 0,
return_gobject = TRUE,
verbose = TRUE,
...
)
# S3 method for class 'GiottoDB'
addStatistics(
gobject,
feat_type = NULL,
spat_unit = NULL,
stats = c("feature", "cell", "area"),
expression_values = c("normalized", "scaled", "custom"),
detection_threshold = 0,
return_gobject = TRUE,
verbose = TRUE,
...
)
# Default S3 method
addStatistics(gobject, ...)Arguments
- gobject
A giotto or GiottoDB object.
- ...
Additional arguments (currently ignored).
- feat_type
Feature type.
- spat_unit
Spatial unit.
- stats
Which statistics to compute.
- expression_values
Expression values to use.
- detection_threshold
Detection threshold.
- return_gobject
Whether to return the updated object.
- verbose
Verbosity.